J5_4V8E_019
3D structure
- PDB id
- 4V8E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- AAAAGACC*GGAUAACA*UCGAUGUC*GGUUCAG*CGGUCU
- Length
- 37 nucleotides
- Bulged bases
- 4V8E|1|CA|A|2085, 4V8E|1|CA|A|2461, 4V8E|1|CA|U|2462, 4V8E|1|CA|U|2622
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V8E|1|CA|A|2080
4V8E|1|CA|A|2081
4V8E|1|CA|A|2082
4V8E|1|CA|A|2083
4V8E|1|CA|G|2084
4V8E|1|CA|A|2085
4V8E|1|CA|C|2086
4V8E|1|CA|C|2087
*
4V8E|1|CA|G|2459
4V8E|1|CA|G|2460
4V8E|1|CA|A|2461
4V8E|1|CA|U|2462
4V8E|1|CA|A|2463
4V8E|1|CA|A|2464
4V8E|1|CA|C|2465
4V8E|1|CA|A|2466
*
4V8E|1|CA|U|2513
4V8E|1|CA|C|2514
4V8E|1|CA|G|2515
4V8E|1|CA|A|2516
4V8E|1|CA|U|2517
4V8E|1|CA|G|2518
4V8E|1|CA|U|2519
4V8E|1|CA|C|2520
*
4V8E|1|CA|G|2595
4V8E|1|CA|G|2596
4V8E|1|CA|U|2597
4V8E|1|CA|U|2598
4V8E|1|CA|C|2599
4V8E|1|CA|A|2600
4V8E|1|CA|G|2601
*
4V8E|1|CA|C|2619
4V8E|1|CA|G|2620
4V8E|1|CA|G|2621
4V8E|1|CA|U|2622
4V8E|1|CA|C|2623
4V8E|1|CA|U|2624
Current chains
- Chain CA
- RNA (2912-MER)
Nearby chains
- Chain C5
- 50S ribosomal protein L32
- Chain CD
- 50S ribosomal protein L2
- Chain CE
- 50S ribosomal protein L3
- Chain CF
- 50S ribosomal protein L4
- Chain CP
- 50S ribosomal protein L16
- Chain CS
- 50S ribosomal protein L22
- Chain DB
- TRNA-TYR
- Chain DC
- Transfer RNA; tRNA
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