J5_4V8E_024
3D structure
- PDB id
- 4V8E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GUUC*GAG*CCG*CUUCG*CC
- Length
- 17 nucleotides
- Bulged bases
- 4V8E|1|DD|U|8, 4V8E|1|DD|U|9
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4V8E_024 not in the Motif Atlas
- Homologous match to J5_4WZD_022
- Geometric discrepancy: 0.2258
- The information below is about J5_4WZD_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_70787.1
- Basepair signature
- cWW-cWW-cWW-F-F-cWW-F-F-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
4V8E|1|DD|G|7
4V8E|1|DD|U|8
4V8E|1|DD|U|9
4V8E|1|DD|C|10
*
4V8E|1|DD|G|26
4V8E|1|DD|A|27
4V8E|1|DD|G|28
*
4V8E|1|DD|C|44
4V8E|1|DD|C|45
4V8E|1|DD|G|46
*
4V8E|1|DD|C|54
4V8E|1|DD|U|55
4V8E|1|DD|U|56
4V8E|1|DD|C|57
4V8E|1|DD|G|58
*
4V8E|1|DD|C|74
4V8E|1|DD|C|75
Current chains
- Chain DD
- TRNA-TYR
Nearby chains
- Chain C6
- 50S ribosomal protein L33
- Chain DJ
- 30S RIBOSOMAL PROTEIN S7
- Chain DN
- 30S RIBOSOMAL PROTEIN S11
Coloring options: