3D structure

PDB id
4V8F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG
Length
26 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_4V8F_012 not in the Motif Atlas
Homologous match to J5_4LFB_001
Geometric discrepancy: 0.0794
The information below is about J5_4LFB_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_70703.1
Basepair signature
cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW
Number of instances in this motif group
1

Unit IDs

4V8F|1|CA|C|36
4V8F|1|CA|U|37
4V8F|1|CA|G|38
4V8F|1|CA|G|39
*
4V8F|1|CA|C|403
4V8F|1|CA|U|404
4V8F|1|CA|U|405
4V8F|1|CA|G|406
*
4V8F|1|CA|C|436
4V8F|1|CA|U|437
4V8F|1|CA|G|438
4V8F|1|CA|A|439
4V8F|1|CA|A|440
4V8F|1|CA|C|442
*
4V8F|1|CA|G|492
4V8F|1|CA|G|493
4V8F|1|CA|U|494
4V8F|1|CA|A|495
4V8F|1|CA|A|496
4V8F|1|CA|U|497
4V8F|1|CA|A|498
4V8F|1|CA|G|500
*
4V8F|1|CA|C|545
4V8F|1|CA|G|546
4V8F|1|CA|A|547
4V8F|1|CA|G|548

Current chains

Chain CA
16S ribosomal RNA

Nearby chains

Chain CG
30S RIBOSOMAL PROTEIN S4
Chain CO
30S RIBOSOMAL PROTEIN S12

Coloring options:


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