J5_4V8F_023
3D structure
- PDB id
- 4V8F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- UUUA*UUUG*CG*CG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 4V8F|1|DA|U|2076, 4V8F|1|DA|G|2428, 4V8F|1|DA|G|2429, 4V8F|1|DA|A|2430, 4V8F|1|DA|U|2431
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4V8F_023 not in the Motif Atlas
- Homologous match to J5_9DFE_007
- Geometric discrepancy: 0.082
- The information below is about J5_9DFE_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.1
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
4V8F|1|DA|U|2074
4V8F|1|DA|U|2075
4V8F|1|DA|U|2076
4V8F|1|DA|A|2077
*
4V8F|1|DA|U|2243
4V8F|1|DA|U|2244
4V8F|1|DA|U|2245
4V8F|1|DA|G|2246
*
4V8F|1|DA|C|2258
4V8F|1|DA|G|2259
*
4V8F|1|DA|C|2281
4V8F|1|DA|G|2282
*
4V8F|1|DA|C|2427
4V8F|1|DA|G|2428
4V8F|1|DA|G|2429
4V8F|1|DA|A|2430
4V8F|1|DA|U|2431
4V8F|1|DA|A|2432
4V8F|1|DA|A|2433
4V8F|1|DA|A|2434
4V8F|1|DA|A|2435
Current chains
- Chain DA
- RNA (2912-MER)
Nearby chains
- Chain CD
- TRNA-TYR
- Chain D3
- 50S ribosomal protein L27
- Chain D8
- 50S ribosomal protein L35
- Chain DD
- 50S ribosomal protein L2
- Chain DO
- 50S ribosomal protein L15
- Chain DZ
- 50S ribosomal protein L28
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