J5_4V8N_011

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

4V8N|1|DA|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V8N_011 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0718

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

4V8N|1|DA|C|47
4V8N|1|DA|G|48
4V8N|1|DA|A|49
4V8N|1|DA|U|50
4V8N|1|DA|G|51
4V8N|1|DA|A|52
4V8N|1|DA|A|53
4V8N|1|DA|G|54
*
4V8N|1|DA|C|116
4V8N|1|DA|G|117
4V8N|1|DA|A|118
4V8N|1|DA|A|119
4V8N|1|DA|U|120
4V8N|1|DA|G|121
*
4V8N|1|DA|C|130
4V8N|1|DA|G|131
*
4V8N|1|DA|C|148
4V8N|1|DA|A|149
4V8N|1|DA|C|150
*
4V8N|1|DA|G|176
4V8N|1|DA|G|177
4V8N|1|DA|G|178

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain D7

50S RIBOSOMAL PROTEIN L34