J5_4V8O_001

3D structure

PDB id

4V8O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the hybrid state of ribosome in complex with the guanosine triphosphatase release factor 3

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V8O_001 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.107

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4V8O|1|AA|C|36
4V8O|1|AA|U|37
4V8O|1|AA|G|38
4V8O|1|AA|G|39
*
4V8O|1|AA|C|403
4V8O|1|AA|U|404
4V8O|1|AA|U|405
4V8O|1|AA|G|406
*
4V8O|1|AA|C|436
4V8O|1|AA|U|437
4V8O|1|AA|G|438
4V8O|1|AA|A|439
4V8O|1|AA|A|441
4V8O|1|AA|C|442
*
4V8O|1|AA|G|492
4V8O|1|AA|G|493
4V8O|1|AA|U|494
4V8O|1|AA|A|495
4V8O|1|AA|A|496
4V8O|1|AA|U|498
4V8O|1|AA|A|499
4V8O|1|AA|G|500
*
4V8O|1|AA|C|545
4V8O|1|AA|G|546
4V8O|1|AA|A|547
4V8O|1|AA|G|548

Current chains

Chain AA

16S RRNA

Nearby chains

Chain AD

30S RIBOSOMAL PROTEIN S4

Chain AL

30S RIBOSOMAL PROTEIN S12