J5_4V8P_006
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- UUGA*UUUG*UG*CG*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 4V8P|1|A1|G|2413, 4V8P|1|A1|A|2787, 4V8P|1|A1|G|2788, 4V8P|1|A1|A|2789, 4V8P|1|A1|A|2790
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4V8P_006 not in the Motif Atlas
- Homologous match to J5_8P9A_015
- Geometric discrepancy: 0.2869
- The information below is about J5_8P9A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_08912.1
- Basepair signature
- cWW-cWH-cWH-tSS-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
4V8P|1|A1|U|2411
4V8P|1|A1|U|2412
4V8P|1|A1|G|2413
4V8P|1|A1|A|2414
*
4V8P|1|A1|U|2600
4V8P|1|A1|U|2601
4V8P|1|A1|U|2602
4V8P|1|A1|G|2603
*
4V8P|1|A1|U|2616
4V8P|1|A1|G|2617
*
4V8P|1|A1|C|2639
4V8P|1|A1|G|2640
*
4V8P|1|A1|C|2786
4V8P|1|A1|A|2787
4V8P|1|A1|G|2788
4V8P|1|A1|A|2789
4V8P|1|A1|A|2790
4V8P|1|A1|A|2791
4V8P|1|A1|A|2792
Current chains
- Chain A1
- 26S RRNA
Nearby chains
- Chain AC
- 60S RIBOSOMAL PROTEIN L36A
- Chain BA
- RPL8
- Chain BK
- 60S RIBOSOMAL PROTEIN L27A
- Chain BL
- RIBOSOMAL PROTEIN L15
- Chain BN
- RPL18
Coloring options: