J5_4V8P_011

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU

Length

40 nucleotides

Bulged bases

4V8P|1|D1|A|2805, 4V8P|1|D1|G|2862, 4V8P|1|D1|U|2863, 4V8P|1|D1|U|2942, 4V8P|1|D1|U|2966, 4V8P|1|D1|U|2967

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8P|1|D1|A|2394
4V8P|1|D1|G|2395
4V8P|1|D1|A|2396
4V8P|1|D1|A|2397
4V8P|1|D1|G|2398
4V8P|1|D1|A|2399
4V8P|1|D1|C|2400
4V8P|1|D1|C|2401
*
4V8P|1|D1|G|2803
4V8P|1|D1|G|2804
4V8P|1|D1|A|2805
4V8P|1|D1|U|2806
4V8P|1|D1|A|2807
4V8P|1|D1|A|2808
4V8P|1|D1|C|2809
4V8P|1|D1|U|2810
4V8P|1|D1|G|2811
*
4V8P|1|D1|C|2855
4V8P|1|D1|U|2856
4V8P|1|D1|U|2857
4V8P|1|D1|C|2858
4V8P|1|D1|G|2859
4V8P|1|D1|A|2860
4V8P|1|D1|U|2861
4V8P|1|D1|G|2862
4V8P|1|D1|U|2863
4V8P|1|D1|C|2864
*
4V8P|1|D1|G|2939
4V8P|1|D1|G|2940
4V8P|1|D1|U|2941
4V8P|1|D1|U|2942
4V8P|1|D1|U|2943
4V8P|1|D1|A|2944
4V8P|1|D1|G|2945
*
4V8P|1|D1|U|2963
4V8P|1|D1|A|2964
4V8P|1|D1|G|2965
4V8P|1|D1|U|2966
4V8P|1|D1|U|2967
4V8P|1|D1|U|2968

Current chains

Chain D1

26S RRNA

Nearby chains

Chain CA

RPL8

Chain CB

RIBOSOMAL PROTEIN L3

Chain CC

RPL4

Chain CK

60S RIBOSOMAL PROTEIN L27A

Chain DT

RPL29