J5_4V8P_016
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- GCAAAUUGG*UG*UG*CGGACAAAG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 4V8P|1|F1|G|2112, 4V8P|1|F1|A|2117
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4V8P_016 not in the Motif Atlas
- Homologous match to J5_8P9A_013
- Geometric discrepancy: 0.0824
- The information below is about J5_8P9A_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_62523.6
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
4V8P|1|F1|G|1930
4V8P|1|F1|C|1931
4V8P|1|F1|A|1932
4V8P|1|F1|A|1933
4V8P|1|F1|A|1934
4V8P|1|F1|U|1935
4V8P|1|F1|U|1936
4V8P|1|F1|G|1937
4V8P|1|F1|G|1938
*
4V8P|1|F1|U|1962
4V8P|1|F1|G|1963
*
4V8P|1|F1|U|2105
4V8P|1|F1|G|2106
*
4V8P|1|F1|C|2110
4V8P|1|F1|G|2111
4V8P|1|F1|G|2112
4V8P|1|F1|A|2113
4V8P|1|F1|C|2114
4V8P|1|F1|A|2115
4V8P|1|F1|A|2116
4V8P|1|F1|A|2117
4V8P|1|F1|G|2118
*
4V8P|1|F1|C|2326
4V8P|1|F1|A|2327
4V8P|1|F1|C|2328
Current chains
- Chain F1
- 26S RRNA
Nearby chains
- Chain EB
- RIBOSOMAL PROTEIN L3
- Chain EJ
- RPL23
- Chain EO
- RPL19
- Chain ET
- RPL24
Coloring options: