J5_4V8P_019
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- CGAUGAAG*UGAACG*UG*CAU*AAG
- Length
- 22 nucleotides
- Bulged bases
- 4V8P|1|G2|U|41
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V8P|1|G2|C|38
4V8P|1|G2|G|39
4V8P|1|G2|A|40
4V8P|1|G2|U|41
4V8P|1|G2|G|42
4V8P|1|G2|A|43
4V8P|1|G2|A|44
4V8P|1|G2|G|45
*
4V8P|1|G2|U|103
4V8P|1|G2|G|104
4V8P|1|G2|A|105
4V8P|1|G2|A|106
4V8P|1|G2|C|107
4V8P|1|G2|G|108
*
4V8P|1|G2|U|116
4V8P|1|G2|G|117
*
4V8P|1|G2|C|134
4V8P|1|G2|A|135
4V8P|1|G2|U|136
*
4V8P|1|H1|A|18
4V8P|1|H1|A|19
4V8P|1|H1|G|20
Current chains
- Chain G2
- 5.8S RRNA
- Chain H1
- 26S RRNA
Nearby chains
- Chain GL
- RIBOSOMAL PROTEIN L15
- Chain GR
- RPL23A
- Chain GU
- RPL35
- Chain HA
- RIBOSOMAL PROTEIN L37
- Chain HB
- RPL39
Coloring options: