J5_4V8P_020
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- GGAGUC*GGAC*GUUC*GC*GCAGAUC
- Length
- 23 nucleotides
- Bulged bases
- 4V8P|1|H1|U|1462
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4V8P_020 not in the Motif Atlas
- Homologous match to J5_8P9A_011
- Geometric discrepancy: 0.0731
- The information below is about J5_8P9A_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_63811.1
- Basepair signature
- cWW-tSH-tSS-tHW-F-cWS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
4V8P|1|H1|G|682
4V8P|1|H1|G|683
4V8P|1|H1|A|684
4V8P|1|H1|G|685
4V8P|1|H1|U|686
4V8P|1|H1|C|687
*
4V8P|1|H1|G|824
4V8P|1|H1|G|825
4V8P|1|H1|A|826
4V8P|1|H1|C|827
*
4V8P|1|H1|G|966
4V8P|1|H1|U|967
4V8P|1|H1|U|968
4V8P|1|H1|C|969
*
4V8P|1|H1|G|1402
4V8P|1|H1|C|1403
*
4V8P|1|H1|G|1457
4V8P|1|H1|C|1458
4V8P|1|H1|A|1459
4V8P|1|H1|G|1460
4V8P|1|H1|A|1461
4V8P|1|H1|U|1462
4V8P|1|H1|C|1463
Current chains
- Chain H1
- 26S RRNA
Nearby chains
- Chain G2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain GC
- RPL4
- Chain GK
- 60S RIBOSOMAL PROTEIN L27A
- Chain GX
- 60S RIBOSOMAL PROTEIN L32
- Chain HO
- RPL28
- Chain HU
- RPL13
Coloring options: