J5_4V8T_005
3D structure
- PDB id
- 4V8T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.1 Å
Loop
- Sequence
- AGAAGACC*GGAUAACUG*CUUCGAUGU*GUUUAG*UAGUUU
- Length
- 38 nucleotides
- Bulged bases
- 4V8T|1|5|A|2401, 4V8T|1|5|A|2817, 4V8T|1|5|G|2874, 4V8T|1|5|U|2978, 4V8T|1|5|U|2979
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V8T|1|5|A|2399
4V8T|1|5|G|2400
4V8T|1|5|A|2401
4V8T|1|5|A|2402
4V8T|1|5|G|2403
4V8T|1|5|A|2404
4V8T|1|5|C|2405
4V8T|1|5|C|2406
*
4V8T|1|5|G|2815
4V8T|1|5|G|2816
4V8T|1|5|A|2817
4V8T|1|5|U|2818
4V8T|1|5|A|2819
4V8T|1|5|A|2820
4V8T|1|5|C|2821
4V8T|1|5|U|2822
4V8T|1|5|G|2823
*
4V8T|1|5|C|2867
4V8T|1|5|U|2868
4V8T|1|5|U|2869
4V8T|1|5|C|2870
4V8T|1|5|G|2871
4V8T|1|5|A|2872
4V8T|1|5|U|2873
4V8T|1|5|G|2874
4V8T|1|5|U|2875
*
4V8T|1|5|G|2952
4V8T|1|5|U|2953
4V8T|1|5|U|2954
4V8T|1|5|U|2955
4V8T|1|5|A|2956
4V8T|1|5|G|2957
*
4V8T|1|5|U|2975
4V8T|1|5|A|2976
4V8T|1|5|G|2977
4V8T|1|5|U|2978
4V8T|1|5|U|2979
4V8T|1|5|U|2980
Current chains
- Chain 5
- 25S RIBOSOMAL RNA
Nearby chains
- Chain A
- 60S RIBOSOMAL PROTEIN L2-B
- Chain B
- 60S RIBOSOMAL PROTEIN L3
- Chain C
- 60S RIBOSOMAL PROTEIN L4-A
- Chain b
- 60S RIBOSOMAL PROTEIN L29
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