J5_4V8U_001

3D structure

PDB id

4V8U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex.

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V8U_001 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.0953

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4V8U|1|AA|C|36
4V8U|1|AA|U|37
4V8U|1|AA|G|38
4V8U|1|AA|G|39
*
4V8U|1|AA|C|403
4V8U|1|AA|U|404
4V8U|1|AA|U|405
4V8U|1|AA|G|406
*
4V8U|1|AA|C|436
4V8U|1|AA|U|437
4V8U|1|AA|G|438
4V8U|1|AA|A|439
4V8U|1|AA|A|441
4V8U|1|AA|C|442
*
4V8U|1|AA|G|492
4V8U|1|AA|G|493
4V8U|1|AA|U|494
4V8U|1|AA|A|495
4V8U|1|AA|A|496
4V8U|1|AA|U|498
4V8U|1|AA|A|499
4V8U|1|AA|G|500
*
4V8U|1|AA|C|545
4V8U|1|AA|G|546
4V8U|1|AA|A|547
4V8U|1|AA|G|548

Current chains

Chain AA

16S RIBOSOMAL RNA

Nearby chains

Chain AD

30S RIBOSOMAL PROTEIN S4

Chain AL

30S RIBOSOMAL PROTEIN S12

Chain AY

ELONGATION FACTOR G