J5_4V8X_002

3D structure

PDB id

4V8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Thermus thermophilus ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CAAG*CGGACGGG*CAG*CAC*GGCAG

Length

23 nucleotides

Bulged bases

4V8X|1|AA|A|109, 4V8X|1|AA|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V8X_002 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.0674

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.6

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

4V8X|1|AA|C|58
4V8X|1|AA|A|59
4V8X|1|AA|A|60
4V8X|1|AA|G|61
*
4V8X|1|AA|C|106
4V8X|1|AA|G|107
4V8X|1|AA|G|108
4V8X|1|AA|A|109
4V8X|1|AA|C|110
4V8X|1|AA|G|111
4V8X|1|AA|G|112
4V8X|1|AA|G|113
*
4V8X|1|AA|C|314
4V8X|1|AA|A|315
4V8X|1|AA|G|316
*
4V8X|1|AA|C|337
4V8X|1|AA|A|338
4V8X|1|AA|C|339
*
4V8X|1|AA|G|350
4V8X|1|AA|G|351
4V8X|1|AA|C|352
4V8X|1|AA|A|353
4V8X|1|AA|G|354

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AP

30S RIBOSOMAL PROTEIN S16

Chain AT

30S RIBOSOMAL PROTEIN S20

Chain BO

50S RIBOSOMAL PROTEIN L14