J5_4V8X_010

3D structure

PDB id

4V8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Thermus thermophilus ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V8X_010 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.0854

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4V8X|1|CA|C|36
4V8X|1|CA|U|37
4V8X|1|CA|G|38
4V8X|1|CA|G|39
*
4V8X|1|CA|C|403
4V8X|1|CA|U|404
4V8X|1|CA|U|405
4V8X|1|CA|G|406
*
4V8X|1|CA|C|436
4V8X|1|CA|U|437
4V8X|1|CA|G|438
4V8X|1|CA|A|439
4V8X|1|CA|A|441
4V8X|1|CA|C|442
*
4V8X|1|CA|G|492
4V8X|1|CA|G|493
4V8X|1|CA|U|494
4V8X|1|CA|A|495
4V8X|1|CA|A|496
4V8X|1|CA|U|498
4V8X|1|CA|A|499
4V8X|1|CA|G|500
*
4V8X|1|CA|C|545
4V8X|1|CA|G|546
4V8X|1|CA|A|547
4V8X|1|CA|G|548

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CD

30S RIBOSOMAL PROTEIN S4

Chain CL

30S RIBOSOMAL PROTEIN S12