J5_4V8Z_002
3D structure
- PDB id
- 4V8Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.6 Å
Loop
- Sequence
- CAUG*CGAAUGGC*GAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 4V8Z|1|B2|A|93, 4V8Z|1|B2|C|424
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4V8Z_002 not in the Motif Atlas
- Homologous match to J5_8P9A_017
- Geometric discrepancy: 0.0623
- The information below is about J5_8P9A_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_58574.1
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
4V8Z|1|B2|C|54
4V8Z|1|B2|A|55
4V8Z|1|B2|U|56
4V8Z|1|B2|G|57
*
4V8Z|1|B2|C|90
4V8Z|1|B2|G|91
4V8Z|1|B2|A|92
4V8Z|1|B2|A|93
4V8Z|1|B2|U|94
4V8Z|1|B2|G|95
4V8Z|1|B2|G|96
4V8Z|1|B2|C|97
*
4V8Z|1|B2|G|386
4V8Z|1|B2|A|387
4V8Z|1|B2|G|388
*
4V8Z|1|B2|C|409
4V8Z|1|B2|A|410
4V8Z|1|B2|C|411
*
4V8Z|1|B2|G|422
4V8Z|1|B2|G|423
4V8Z|1|B2|C|424
4V8Z|1|B2|A|425
4V8Z|1|B2|G|426
Current chains
- Chain B2
- 18S RIBOSOMAL RNA
Nearby chains
- Chain AE
- 40S RIBOSOMAL PROTEIN S4-A
- Chain AG
- 40S RIBOSOMAL PROTEIN S6-A
- Chain AI
- 40S RIBOSOMAL PROTEIN S8-A
- Chain AJ
- 40S RIBOSOMAL PROTEIN S9-A
- Chain AY
- 40S RIBOSOMAL PROTEIN S24-A
- Chain BV
- 60S RIBOSOMAL PROTEIN L23-A
- Chain CV
- EUKARYOTIC TRANSLATION INITIATION FACTOR 5B, PROBABLE TRANSLATION INITIATION FACTOR IF-2
Coloring options: