J5_4V8Z_003

3D structure

PDB id

4V8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

AUAGUUCCUUUACUACAUGG*CAUGCUUAAAA*UG*CGA*UGGUU

Length

41 nucleotides

Bulged bases

4V8Z|1|B2|U|128, 4V8Z|1|B2|U|132, 4V8Z|1|B2|C|136, 4V8Z|1|B2|U|137, 4V8Z|1|B2|A|140, 4V8Z|1|B2|U|141, 4V8Z|1|B2|U|178

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8Z|1|B2|A|124
4V8Z|1|B2|U|125
4V8Z|1|B2|A|126
4V8Z|1|B2|G|127
4V8Z|1|B2|U|128
4V8Z|1|B2|U|129
4V8Z|1|B2|C|130
4V8Z|1|B2|C|131
4V8Z|1|B2|U|132
4V8Z|1|B2|U|133
4V8Z|1|B2|U|134
4V8Z|1|B2|A|135
4V8Z|1|B2|C|136
4V8Z|1|B2|U|137
4V8Z|1|B2|A|138
4V8Z|1|B2|C|139
4V8Z|1|B2|A|140
4V8Z|1|B2|U|141
4V8Z|1|B2|G|142
4V8Z|1|B2|G|143
*
4V8Z|1|B2|C|172
4V8Z|1|B2|A|173
4V8Z|1|B2|U|174
4V8Z|1|B2|G|175
4V8Z|1|B2|C|176
4V8Z|1|B2|U|177
4V8Z|1|B2|U|178
4V8Z|1|B2|A|179
4V8Z|1|B2|A|180
4V8Z|1|B2|A|181
4V8Z|1|B2|A|182
*
4V8Z|1|B2|U|203
4V8Z|1|B2|G|204
*
4V8Z|1|B2|C|263
4V8Z|1|B2|G|264
4V8Z|1|B2|A|265
*
4V8Z|1|B2|U|289
4V8Z|1|B2|G|290
4V8Z|1|B2|G|291
4V8Z|1|B2|U|292
4V8Z|1|B2|U|293

Current chains

Chain B2

18S RIBOSOMAL RNA

Nearby chains

Chain AE

40S RIBOSOMAL PROTEIN S4-A

Chain AG

40S RIBOSOMAL PROTEIN S6-A

Chain AI

40S RIBOSOMAL PROTEIN S8-A