J5_4V8Z_005
3D structure
- PDB id
- 4V8Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.6 Å
Loop
- Sequence
- ACUUUG*UUUCCU*ACUUU*AUAGAAUAGGA*UAAUGAU
- Length
- 35 nucleotides
- Bulged bases
- 4V8Z|1|B2|U|639, 4V8Z|1|B2|C|696, 4V8Z|1|B2|C|697, 4V8Z|1|B2|U|813, 4V8Z|1|B2|G|815, 4V8Z|1|B2|A|856
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V8Z|1|B2|A|636
4V8Z|1|B2|C|637
4V8Z|1|B2|U|638
4V8Z|1|B2|U|639
4V8Z|1|B2|U|640
4V8Z|1|B2|G|641
*
4V8Z|1|B2|U|693
4V8Z|1|B2|U|694
4V8Z|1|B2|U|695
4V8Z|1|B2|C|696
4V8Z|1|B2|C|697
4V8Z|1|B2|U|698
*
4V8Z|1|B2|A|740
4V8Z|1|B2|C|741
4V8Z|1|B2|U|742
4V8Z|1|B2|U|743
4V8Z|1|B2|U|744
*
4V8Z|1|B2|A|807
4V8Z|1|B2|U|808
4V8Z|1|B2|A|809
4V8Z|1|B2|G|810
4V8Z|1|B2|A|811
4V8Z|1|B2|A|812
4V8Z|1|B2|U|813
4V8Z|1|B2|A|814
4V8Z|1|B2|G|815
4V8Z|1|B2|G|816
4V8Z|1|B2|A|817
*
4V8Z|1|B2|U|854
4V8Z|1|B2|A|855
4V8Z|1|B2|A|856
4V8Z|1|B2|U|857
4V8Z|1|B2|G|858
4V8Z|1|B2|A|859
4V8Z|1|B2|U|860
Current chains
- Chain B2
- 18S RIBOSOMAL RNA
Nearby chains
- Chain AH
- 40S RIBOSOMAL PROTEIN S7-A
- Chain AL
- 40S RIBOSOMAL PROTEIN S11-A
- Chain AN
- 40S RIBOSOMAL PROTEIN S13
- Chain AW
- 40S RIBOSOMAL PROTEIN S22-A
- Chain BR
- 60S RIBOSOMAL PROTEIN L19-B
Coloring options: