J5_4V8Z_010

3D structure

PDB id

4V8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

AGAAGACC*GGAUAACUG*CUUCGAUGU*GUUUAG*UAGUUU

Length

38 nucleotides

Bulged bases

4V8Z|1|B5|A|2401, 4V8Z|1|B5|A|2817, 4V8Z|1|B5|G|2874, 4V8Z|1|B5|U|2978, 4V8Z|1|B5|U|2979

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8Z|1|B5|A|2399
4V8Z|1|B5|G|2400
4V8Z|1|B5|A|2401
4V8Z|1|B5|A|2402
4V8Z|1|B5|G|2403
4V8Z|1|B5|A|2404
4V8Z|1|B5|C|2405
4V8Z|1|B5|C|2406
*
4V8Z|1|B5|G|2815
4V8Z|1|B5|G|2816
4V8Z|1|B5|A|2817
4V8Z|1|B5|U|2818
4V8Z|1|B5|A|2819
4V8Z|1|B5|A|2820
4V8Z|1|B5|C|2821
4V8Z|1|B5|U|2822
4V8Z|1|B5|G|2823
*
4V8Z|1|B5|C|2867
4V8Z|1|B5|U|2868
4V8Z|1|B5|U|2869
4V8Z|1|B5|C|2870
4V8Z|1|B5|G|2871
4V8Z|1|B5|A|2872
4V8Z|1|B5|U|2873
4V8Z|1|B5|G|2874
4V8Z|1|B5|U|2875
*
4V8Z|1|B5|G|2952
4V8Z|1|B5|U|2953
4V8Z|1|B5|U|2954
4V8Z|1|B5|U|2955
4V8Z|1|B5|A|2956
4V8Z|1|B5|G|2957
*
4V8Z|1|B5|U|2975
4V8Z|1|B5|A|2976
4V8Z|1|B5|G|2977
4V8Z|1|B5|U|2978
4V8Z|1|B5|U|2979
4V8Z|1|B5|U|2980

Current chains

Chain B5

25S RIBOSOMAL RNA

Nearby chains

Chain BA

60S RIBOSOMAL PROTEIN L2-B

Chain BB

60S RIBOSOMAL PROTEIN L3

Chain BC

60S RIBOSOMAL PROTEIN L4-A

Chain Bb

60S RIBOSOMAL PROTEIN L29