J5_4V8Z_011
3D structure
- PDB id
- 4V8Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.6 Å
Loop
- Sequence
- UUGA*UUUG*CA*UG*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 4V8Z|1|B5|G|2418, 4V8Z|1|B5|A|2799, 4V8Z|1|B5|G|2800, 4V8Z|1|B5|A|2801, 4V8Z|1|B5|A|2802
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4V8Z_011 not in the Motif Atlas
- Homologous match to J5_8P9A_015
- Geometric discrepancy: 0.045
- The information below is about J5_8P9A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_96125.1
- Basepair signature
- cWW-cWH-cWH-tSS-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
4V8Z|1|B5|U|2416
4V8Z|1|B5|U|2417
4V8Z|1|B5|G|2418
4V8Z|1|B5|A|2419
*
4V8Z|1|B5|U|2611
4V8Z|1|B5|U|2612
4V8Z|1|B5|U|2613
4V8Z|1|B5|G|2614
*
4V8Z|1|B5|C|2627
4V8Z|1|B5|A|2628
*
4V8Z|1|B5|U|2650
4V8Z|1|B5|G|2651
*
4V8Z|1|B5|C|2798
4V8Z|1|B5|A|2799
4V8Z|1|B5|G|2800
4V8Z|1|B5|A|2801
4V8Z|1|B5|A|2802
4V8Z|1|B5|A|2803
4V8Z|1|B5|A|2804
Current chains
- Chain B5
- 25S RIBOSOMAL RNA
Nearby chains
- Chain BA
- 60S RIBOSOMAL PROTEIN L2-B
- Chain BN
- 60S RIBOSOMAL PROTEIN L15-A
- Chain BQ
- 60S RIBOSOMAL PROTEIN L18-A
- Chain BT
- 60S RIBOSOMAL PROTEIN L21-A
- Chain Ba
- 60S RIBOSOMAL PROTEIN L28
- Chain Bb
- 60S RIBOSOMAL PROTEIN L29
- Chain Bo
- 60S RIBOSOMAL PROTEIN L42-A
- Chain CW
- Transfer RNA; tRNA
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