J5_4V91_002
3D structure
- PDB id
- 4V91 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GGAGUC*GGAC*GUUC*GC*GCAGAUC
- Length
- 23 nucleotides
- Bulged bases
- 4V91|1|1|U|1436
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4V91_002 not in the Motif Atlas
- Homologous match to J5_8P9A_011
- Geometric discrepancy: 0.0599
- The information below is about J5_8P9A_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_63811.1
- Basepair signature
- cWW-tSH-tSS-tHW-F-cWS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
4V91|1|1|G|658
4V91|1|1|G|659
4V91|1|1|A|660
4V91|1|1|G|661
4V91|1|1|U|662
4V91|1|1|C|663
*
4V91|1|1|G|799
4V91|1|1|G|800
4V91|1|1|A|801
4V91|1|1|C|802
*
4V91|1|1|G|941
4V91|1|1|U|942
4V91|1|1|U|943
4V91|1|1|C|944
*
4V91|1|1|G|1375
4V91|1|1|C|1376
*
4V91|1|1|G|1431
4V91|1|1|C|1432
4V91|1|1|A|1433
4V91|1|1|G|1434
4V91|1|1|A|1435
4V91|1|1|U|1436
4V91|1|1|C|1437
Current chains
- Chain 1
- 25S RRNA
Nearby chains
- Chain 4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain C
- UL4
- Chain L
- EL13
- Chain N
- EL15
- Chain a
- UL15
- Chain e
- EL32
Coloring options: