J5_4V91_004
3D structure
- PDB id
- 4V91 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GCAAAAUAG*UG*UG*CGGACAAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 4V91|1|1|G|2116, 4V91|1|1|G|2121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4V91_004 not in the Motif Atlas
- Homologous match to J5_8P9A_013
- Geometric discrepancy: 0.0833
- The information below is about J5_8P9A_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_62523.6
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
4V91|1|1|G|1906
4V91|1|1|C|1907
4V91|1|1|A|1908
4V91|1|1|A|1909
4V91|1|1|A|1910
4V91|1|1|A|1911
4V91|1|1|U|1912
4V91|1|1|A|1913
4V91|1|1|G|1914
*
4V91|1|1|U|1938
4V91|1|1|G|1939
*
4V91|1|1|U|2109
4V91|1|1|G|2110
*
4V91|1|1|C|2114
4V91|1|1|G|2115
4V91|1|1|G|2116
4V91|1|1|A|2117
4V91|1|1|C|2118
4V91|1|1|A|2119
4V91|1|1|A|2120
4V91|1|1|G|2121
4V91|1|1|G|2122
*
4V91|1|1|C|2331
4V91|1|1|A|2332
4V91|1|1|C|2333
Current chains
- Chain 1
- 25S RRNA
Nearby chains
- Chain B
- UL3
- Chain R
- EL19
- Chain V
- UL14
- Chain W
- EL24
Coloring options: