J5_4V92_003

3D structure

PDB id

4V92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CAUG*CGAAUGGC*GAG*CAC*GGCAG

Length

23 nucleotides

Bulged bases

4V92|1|A2|U|56, 4V92|1|A2|A|93, 4V92|1|A2|C|424

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V92_003 not in the Motif Atlas

Homologous match to J5_8C3A_020

Geometric discrepancy: 0.1329

The information below is about J5_8C3A_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.4

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4V92|1|A2|C|54
4V92|1|A2|A|55
4V92|1|A2|U|56
4V92|1|A2|G|57
*
4V92|1|A2|C|90
4V92|1|A2|G|91
4V92|1|A2|A|92
4V92|1|A2|A|93
4V92|1|A2|U|94
4V92|1|A2|G|95
4V92|1|A2|G|96
4V92|1|A2|C|97
*
4V92|1|A2|G|386
4V92|1|A2|A|387
4V92|1|A2|G|388
*
4V92|1|A2|C|409
4V92|1|A2|A|410
4V92|1|A2|C|411
*
4V92|1|A2|G|422
4V92|1|A2|G|423
4V92|1|A2|C|424
4V92|1|A2|A|425
4V92|1|A2|G|426

Current chains

Chain A2

18S RRNA

Nearby chains

Chain BG

ES6

Chain BI

ES8

Chain BY

ES24