J5_4V9B_011

3D structure

PDB id

4V9B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 70S ribosome with tigecycline.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V9B_011 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.0783

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4V9B|1|CA|C|36
4V9B|1|CA|U|37
4V9B|1|CA|G|38
4V9B|1|CA|G|39
*
4V9B|1|CA|C|403
4V9B|1|CA|U|404
4V9B|1|CA|U|405
4V9B|1|CA|G|406
*
4V9B|1|CA|C|436
4V9B|1|CA|U|437
4V9B|1|CA|G|438
4V9B|1|CA|A|439
4V9B|1|CA|A|440
4V9B|1|CA|C|442
*
4V9B|1|CA|G|492
4V9B|1|CA|G|493
4V9B|1|CA|U|494
4V9B|1|CA|A|495
4V9B|1|CA|A|496
4V9B|1|CA|U|497
4V9B|1|CA|A|498
4V9B|1|CA|G|500
*
4V9B|1|CA|C|545
4V9B|1|CA|G|546
4V9B|1|CA|A|547
4V9B|1|CA|G|548

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CG

30S RIBOSOMAL PROTEIN S4

Chain CO

30S RIBOSOMAL PROTEIN S12