J5_4V9C_011

3D structure

PDB id

4V9C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Allosteric control of the ribosome by small-molecule antibiotics

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GCAAG*CGGACGGG*CAC*GAC*GGCAGC

Length

25 nucleotides

Bulged bases

4V9C|1|CA|A|109, 4V9C|1|CA|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V9C|1|CA|G|57
4V9C|1|CA|C|58
4V9C|1|CA|A|59
4V9C|1|CA|A|60
4V9C|1|CA|G|61
*
4V9C|1|CA|C|106
4V9C|1|CA|G|107
4V9C|1|CA|G|108
4V9C|1|CA|A|109
4V9C|1|CA|C|110
4V9C|1|CA|G|111
4V9C|1|CA|G|112
4V9C|1|CA|G|113
*
4V9C|1|CA|C|314
4V9C|1|CA|A|315
4V9C|1|CA|C|316
*
4V9C|1|CA|G|337
4V9C|1|CA|A|338
4V9C|1|CA|C|339
*
4V9C|1|CA|G|350
4V9C|1|CA|G|351
4V9C|1|CA|C|352
4V9C|1|CA|A|353
4V9C|1|CA|G|354
4V9C|1|CA|C|355

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CP

30S ribosomal protein S16

Chain CT

30S ribosomal protein S20

Chain DK

50S ribosomal protein L14

Chain DP

50S ribosomal protein L19