J5_4V9C_019

3D structure

PDB id

4V9C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Allosteric control of the ribosome by small-molecule antibiotics

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V9C_019 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.1117

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

4V9C|1|CA|C|36
4V9C|1|CA|U|37
4V9C|1|CA|G|38
4V9C|1|CA|G|39
*
4V9C|1|CA|C|403
4V9C|1|CA|G|404
4V9C|1|CA|U|405
4V9C|1|CA|G|406
*
4V9C|1|CA|C|436
4V9C|1|CA|U|437
4V9C|1|CA|U|438
4V9C|1|CA|U|439
4V9C|1|CA|C|440
4V9C|1|CA|A|441
4V9C|1|CA|G|442
*
4V9C|1|CA|C|492
4V9C|1|CA|A|493
4V9C|1|CA|G|494
4V9C|1|CA|A|495
4V9C|1|CA|A|496
4V9C|1|CA|G|497
4V9C|1|CA|A|498
4V9C|1|CA|A|499
4V9C|1|CA|G|500
*
4V9C|1|CA|C|545
4V9C|1|CA|A|546
4V9C|1|CA|A|547
4V9C|1|CA|G|548

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CD

30S ribosomal protein S4

Chain CL

30S ribosomal protein S12