J5_4V9D_018
3D structure
- PDB id
- 4V9D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of the bacterial ribosome in classical and hybrid states of tRNA binding
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- UUUA*UUUG*CU*AG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 4V9D|1|DA|U|2076, 4V9D|1|DA|G|2428, 4V9D|1|DA|G|2429, 4V9D|1|DA|A|2430, 4V9D|1|DA|U|2431
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4V9D_018 not in the Motif Atlas
- Homologous match to J5_9DFE_007
- Geometric discrepancy: 0.0915
- The information below is about J5_9DFE_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.1
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
4V9D|1|DA|U|2074
4V9D|1|DA|U|2075
4V9D|1|DA|U|2076
4V9D|1|DA|A|2077
*
4V9D|1|DA|U|2243
4V9D|1|DA|U|2244
4V9D|1|DA|U|2245
4V9D|1|DA|G|2246
*
4V9D|1|DA|C|2258
4V9D|1|DA|U|2259
*
4V9D|1|DA|A|2281
4V9D|1|DA|G|2282
*
4V9D|1|DA|C|2427
4V9D|1|DA|G|2428
4V9D|1|DA|G|2429
4V9D|1|DA|A|2430
4V9D|1|DA|U|2431
4V9D|1|DA|A|2432
4V9D|1|DA|A|2433
4V9D|1|DA|A|2434
4V9D|1|DA|A|2435
Current chains
- Chain DA
- 23S rRNA
Nearby chains
- Chain D1
- 50S ribosomal protein L33
- Chain D3
- 50S ribosomal protein L35
- Chain DC
- 50S ribosomal protein L2
- Chain DL
- 50S ribosomal protein L15
- Chain DW
- 50S ribosomal protein L27
- Chain DX
- 50S ribosomal protein L28
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