J5_4V9F_002

3D structure

PDB id

4V9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

The re-refined crystal structure of the Haloarcula marismortui large ribosomal subunit at 2.4 Angstrom resolution: more complete structure of the L7/L12 and L1 stalk, L5 and LX proteins

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GCG*CGUAC*GAG*CC*GU

Length

15 nucleotides

Bulged bases

4V9F|1|0|U|619

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_43153.5

Basepair signature

cWW-cWW-cWW-F-cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4V9F|1|0|G|537
4V9F|1|0|C|538
4V9F|1|0|G|539
*
4V9F|1|0|C|617
4V9F|1|0|G|618
4V9F|1|0|U|619
4V9F|1|0|A|620
4V9F|1|0|C|621
*
4V9F|1|0|G|634
4V9F|1|0|A|635
4V9F|1|0|G|636
*
4V9F|1|0|C|1365
4V9F|1|0|C|1366
*
4V9F|1|0|G|2058
4V9F|1|0|U|2059

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L4P

Chain R

50S ribosomal protein L22P

Chain Y

50S ribosomal protein L32e