J5_4V9F_003
3D structure
- PDB id
- 4V9F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The re-refined crystal structure of the Haloarcula marismortui large ribosomal subunit at 2.4 Angstrom resolution: more complete structure of the L7/L12 and L1 stalk, L5 and LX proteins
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.4 Å
Loop
- Sequence
- GGAGUG*CGAC*GUUC*GC*GAAAAUC
- Length
- 23 nucleotides
- Bulged bases
- 4V9F|1|0|U|1359
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_56920.1
- Basepair signature
- cWW-tSH-tSS-tHH-F-F-F-tWS-cWW-cWW-F-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
4V9F|1|0|G|641
4V9F|1|0|G|642
4V9F|1|0|A|643
4V9F|1|0|G|644
4V9F|1|0|U|645
4V9F|1|0|G|646
*
4V9F|1|0|C|759
4V9F|1|0|G|760
4V9F|1|0|A|761
4V9F|1|0|C|762
*
4V9F|1|0|G|902
4V9F|1|0|U|903
4V9F|1|0|U|904
4V9F|1|0|C|905
*
4V9F|1|0|G|1300
4V9F|1|0|C|1301
*
4V9F|1|0|G|1354
4V9F|1|0|A|1355
4V9F|1|0|A|1356
4V9F|1|0|A|1357
4V9F|1|0|A|1358
4V9F|1|0|U|1359
4V9F|1|0|C|1360
Current chains
- Chain 0
- 23S Ribosomal RNA
Nearby chains
- Chain C
- 50S ribosomal protein L4P
- Chain L
- 50S ribosomal protein L15P
- Chain Y
- 50S ribosomal protein L32e
Coloring options: