Loop J5_4V9F

3D structure

PDB id: 4V9F (explore in PDB, NAKB, or RNA 3D Hub)
Description: The re-refined crystal structure of the Haloarcula marismortui large ribosomal subunit at 2.4 Angstrom resolution: more complete structure of the L7/L12 and L1 stalk, L5 and LX proteins
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å

Loop

Sequence: CGAAGACC*GGAUAACAG*CCUCGAUGU*G(UR3)U(PSU)AG*CGGCUG
Length: 38 nucleotides
Bulged bases: 4V9F|1|0|A|2483, 4V9F|1|0|C|2644, 4V9F|1|0|U|2645
QA status: Modified nucleotides: UR3, PSU

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: J5_14788.1
Basepair signature: cWW-F-tHS-F-F-F-cWW-F-cWW-cWW-F-F-tHH-cWW-F-tHW-F-F-F-F-F-cWW-F
Number of instances in this motif group: 2

Unit IDs

4V9F|1|0|C|2098
4V9F|1|0|G|2099
4V9F|1|0|A|2100
4V9F|1|0|A|2101
4V9F|1|0|G|2102
4V9F|1|0|A|2103
4V9F|1|0|C|2104
4V9F|1|0|C|2105
*
4V9F|1|0|G|2481
4V9F|1|0|G|2482
4V9F|1|0|A|2483
4V9F|1|0|U|2484
4V9F|1|0|A|2485
4V9F|1|0|A|2486
4V9F|1|0|C|2487
4V9F|1|0|A|2488
4V9F|1|0|G|2489
*
4V9F|1|0|C|2533
4V9F|1|0|C|2534
4V9F|1|0|U|2535
4V9F|1|0|C|2536
4V9F|1|0|G|2537
4V9F|1|0|A|2538
4V9F|1|0|U|2539
4V9F|1|0|G|2540
4V9F|1|0|U|2541
*
4V9F|1|0|G|2618
4V9F|1|0|UR3|2619
4V9F|1|0|U|2620
4V9F|1|0|PSU|2621
4V9F|1|0|A|2622
4V9F|1|0|G|2623
*
4V9F|1|0|C|2641
4V9F|1|0|G|2642
4V9F|1|0|G|2643
4V9F|1|0|C|2644
4V9F|1|0|U|2645
4V9F|1|0|G|2646

Current chains

Chain 0: 23S Ribosomal RNA

Nearby chains

Chain A: 50S ribosomal protein L2P
Chain B: 50S ribosomal protein L3P
Chain C: 50S ribosomal protein L4P
Chain L: 50S ribosomal protein L15P
Chain R: 50S ribosomal protein L22P

J5_4V9F_007