Motif J5_05627.1 Version J5_05627.1 of this group appears in releases 4.10 to 4.10
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | break | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | break | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | break | 26 | 27 | 28 | 29 | 30 | 31 | break | 32 | 33 | 34 | 35 | 1-35 | 5-13 | 6-22 | 7-12 | 7-20 | 8-9 | 9-11 | 10-13 | 12-20 | 14-19 | 15-18 | 16-17 | 19-23 | 25-26 | 30-34 | 31-32 | |||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J5_4V9F_007 | 4V9F | 0.0000 | 3 | 0 | LSU rRNA | C | 2098 | G | 2099 | A | 2100 | A | 2101 | G | 2102 | A | 2103 | C | 2104 | C | 2105 | * | G | 2481 | G | 2482 | U | 2484 | A | 2485 | A | 2486 | C | 2487 | A | 2488 | G | 2489 | * | C | 2533 | C | 2534 | U | 2535 | C | 2536 | G | 2537 | A | 2538 | U | 2539 | G | 2540 | U | 2541 | * | G | 2618 | UR3 | 2619 | U | 2620 | PSU | 2621 | A | 2622 | G | 2623 | * | C | 2641 | G | 2642 | G | 2643 | G | 2646 | cWW | ncWW | tHH | cWW | ntWS | cWW | ntSW | tHH | tHW | ncWW | ncWW | cWW | ncSH | cWW | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGAAGACC*GGAUAACAG*CCUCGAUGU*G(UR3)U(PSU)AG*CGGCUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAGAC*GAUAACA*CUCGAUG*(UR3)U(PSU)A*GGCU | 1 |
Release history
| Release | 4.10 |
|---|---|
| Date | 2026-05-20 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (1)
- Basepair signature
- cWW-F-tHS-F-F-F-cWW-F-tHH-cWW-F-cWW-F-F-tHH-cWW-F-tHW-F-F-F-F-F-cWW-F-F
- Heat map statistics
- Min 0.00 | Avg 0.00 | Max 0.00
Coloring options: