J5_4V9I_002

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GCAAG*CGGACGGG*CAG*CAC*GGCAGC

Length

25 nucleotides

Bulged bases

4V9I|1|AA|A|109, 4V9I|1|AA|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V9I|1|AA|G|57
4V9I|1|AA|C|58
4V9I|1|AA|A|59
4V9I|1|AA|A|60
4V9I|1|AA|G|61
*
4V9I|1|AA|C|106
4V9I|1|AA|G|107
4V9I|1|AA|G|108
4V9I|1|AA|A|109
4V9I|1|AA|C|110
4V9I|1|AA|G|111
4V9I|1|AA|G|112
4V9I|1|AA|G|113
*
4V9I|1|AA|C|314
4V9I|1|AA|A|315
4V9I|1|AA|G|316
*
4V9I|1|AA|C|337
4V9I|1|AA|A|338
4V9I|1|AA|C|339
*
4V9I|1|AA|G|350
4V9I|1|AA|G|351
4V9I|1|AA|C|352
4V9I|1|AA|A|353
4V9I|1|AA|G|354
4V9I|1|AA|C|355

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AP

30S Ribosomal protein S16

Chain AT

30S Ribosomal protein S20

Chain BO

50S ribosomal protein L14

Chain BT

50S ribosomal protein L19