3D structure

PDB id
4V9I (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
AAAAGACC*GGAUAACA*UCGAUGUC*GGUUCAG*CGGUCU
Length
37 nucleotides
Bulged bases
4V9I|1|BA|A|2459, 4V9I|1|BA|U|2460, 4V9I|1|BA|U|2620
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4V9I|1|BA|A|2078
4V9I|1|BA|A|2079
4V9I|1|BA|A|2080
4V9I|1|BA|A|2081
4V9I|1|BA|G|2082
4V9I|1|BA|A|2083
4V9I|1|BA|C|2084
4V9I|1|BA|C|2085
*
4V9I|1|BA|G|2457
4V9I|1|BA|G|2458
4V9I|1|BA|A|2459
4V9I|1|BA|U|2460
4V9I|1|BA|A|2461
4V9I|1|BA|A|2462
4V9I|1|BA|C|2463
4V9I|1|BA|A|2464
*
4V9I|1|BA|U|2511
4V9I|1|BA|C|2512
4V9I|1|BA|G|2513
4V9I|1|BA|A|2514
4V9I|1|BA|U|2515
4V9I|1|BA|G|2516
4V9I|1|BA|U|2517
4V9I|1|BA|C|2518
*
4V9I|1|BA|G|2593
4V9I|1|BA|G|2594
4V9I|1|BA|U|2595
4V9I|1|BA|U|2596
4V9I|1|BA|C|2597
4V9I|1|BA|A|2598
4V9I|1|BA|G|2599
*
4V9I|1|BA|C|2617
4V9I|1|BA|G|2618
4V9I|1|BA|G|2619
4V9I|1|BA|U|2620
4V9I|1|BA|C|2621
4V9I|1|BA|U|2622

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain AV
Transfer RNA; tRNA
Chain AY
A-SITE tRNA
Chain B0
50S ribosomal protein L27
Chain B5
50S ribosomal protein L32
Chain BD
50S ribosomal protein L2
Chain BE
50S ribosomal protein L3
Chain BF
50S ribosomal protein L4
Chain BQ
50S ribosomal protein L16
Chain BW
50S ribosomal protein L22

Coloring options:

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