J5_4V9I_007
3D structure
- PDB id
- 4V9I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- AAAAGACC*GGAUAACA*UCGAUGUC*GGUUCAG*CGGUCU
- Length
- 37 nucleotides
- Bulged bases
- 4V9I|1|BA|A|2459, 4V9I|1|BA|U|2460, 4V9I|1|BA|U|2620
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V9I|1|BA|A|2078
4V9I|1|BA|A|2079
4V9I|1|BA|A|2080
4V9I|1|BA|A|2081
4V9I|1|BA|G|2082
4V9I|1|BA|A|2083
4V9I|1|BA|C|2084
4V9I|1|BA|C|2085
*
4V9I|1|BA|G|2457
4V9I|1|BA|G|2458
4V9I|1|BA|A|2459
4V9I|1|BA|U|2460
4V9I|1|BA|A|2461
4V9I|1|BA|A|2462
4V9I|1|BA|C|2463
4V9I|1|BA|A|2464
*
4V9I|1|BA|U|2511
4V9I|1|BA|C|2512
4V9I|1|BA|G|2513
4V9I|1|BA|A|2514
4V9I|1|BA|U|2515
4V9I|1|BA|G|2516
4V9I|1|BA|U|2517
4V9I|1|BA|C|2518
*
4V9I|1|BA|G|2593
4V9I|1|BA|G|2594
4V9I|1|BA|U|2595
4V9I|1|BA|U|2596
4V9I|1|BA|C|2597
4V9I|1|BA|A|2598
4V9I|1|BA|G|2599
*
4V9I|1|BA|C|2617
4V9I|1|BA|G|2618
4V9I|1|BA|G|2619
4V9I|1|BA|U|2620
4V9I|1|BA|C|2621
4V9I|1|BA|U|2622
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain AV
- Transfer RNA; tRNA
- Chain AY
- A-SITE tRNA
- Chain B0
- 50S ribosomal protein L27
- Chain B5
- 50S ribosomal protein L32
- Chain BD
- 50S ribosomal protein L2
- Chain BE
- 50S ribosomal protein L3
- Chain BF
- 50S ribosomal protein L4
- Chain BQ
- 50S ribosomal protein L16
- Chain BW
- 50S ribosomal protein L22
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