J5_4V9J_011

3D structure

PDB id

4V9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate GDPNP-II containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.86 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V9J_011 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.1136

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4V9J|1|CA|C|36
4V9J|1|CA|U|37
4V9J|1|CA|G|38
4V9J|1|CA|G|39
*
4V9J|1|CA|C|403
4V9J|1|CA|U|404
4V9J|1|CA|U|405
4V9J|1|CA|G|406
*
4V9J|1|CA|C|436
4V9J|1|CA|U|437
4V9J|1|CA|G|438
4V9J|1|CA|A|440
4V9J|1|CA|A|441
4V9J|1|CA|C|442
*
4V9J|1|CA|G|492
4V9J|1|CA|G|493
4V9J|1|CA|U|494
4V9J|1|CA|A|495
4V9J|1|CA|A|497
4V9J|1|CA|U|498
4V9J|1|CA|A|499
4V9J|1|CA|G|500
*
4V9J|1|CA|C|545
4V9J|1|CA|G|546
4V9J|1|CA|A|547
4V9J|1|CA|G|548

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CD

30S ribosomal protein S4

Chain CL

30S ribosomal protein S12

Chain CY

Elongation factor G