J5_4V9L_004

3D structure

PDB id

4V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUAAAC*GGGUCGUG*CGAGUAC*GGAAUCUG*UAAG

Length

33 nucleotides

Bulged bases

4V9L|1|BA|U|271|||D, 4V9L|1|BA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V9L|1|BA|C|268
4V9L|1|BA|U|269
4V9L|1|BA|A|270|||A
4V9L|1|BA|A|270|||B
4V9L|1|BA|A|270|||C
4V9L|1|BA|C|270|||D
*
4V9L|1|BA|G|270|||X
4V9L|1|BA|G|270|||Y
4V9L|1|BA|G|270|||Z
4V9L|1|BA|U|271|||A
4V9L|1|BA|C|271|||B
4V9L|1|BA|G|271|||C
4V9L|1|BA|U|271|||D
4V9L|1|BA|G|271
*
4V9L|1|BA|C|366|||B
4V9L|1|BA|G|370
4V9L|1|BA|A|371
4V9L|1|BA|G|372
4V9L|1|BA|U|373
4V9L|1|BA|A|374
4V9L|1|BA|C|375
*
4V9L|1|BA|G|399
4V9L|1|BA|G|400
4V9L|1|BA|A|401
4V9L|1|BA|A|402
4V9L|1|BA|U|403
4V9L|1|BA|C|404
4V9L|1|BA|U|405
4V9L|1|BA|G|406
*
4V9L|1|BA|U|421
4V9L|1|BA|A|422
4V9L|1|BA|A|423
4V9L|1|BA|G|424

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B1

50S ribosomal protein L28