J5_4V9M_013

3D structure

PDB id

4V9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Ribosome translocation intermediate FA-4.2A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

4V9M|1|DA|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V9M_013 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.1641

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.1

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

4V9M|1|DA|C|47
4V9M|1|DA|G|48
4V9M|1|DA|A|49
4V9M|1|DA|U|50
4V9M|1|DA|G|51
4V9M|1|DA|A|52
4V9M|1|DA|A|53
4V9M|1|DA|G|54
*
4V9M|1|DA|C|116
4V9M|1|DA|G|117
4V9M|1|DA|A|118
4V9M|1|DA|A|119
4V9M|1|DA|U|120
4V9M|1|DA|G|121
*
4V9M|1|DA|C|130
4V9M|1|DA|G|131
*
4V9M|1|DA|C|148
4V9M|1|DA|A|149
4V9M|1|DA|C|150
*
4V9M|1|DA|G|176
4V9M|1|DA|G|177
4V9M|1|DA|G|178

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D7

50S ribosomal protein L34

Chain DX

50S ribosomal protein L23