J5_4V9N_002

3D structure

PDB id

4V9N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CAAG*CGGACGGG*CAG*CAC*GGCAG

Length

23 nucleotides

Bulged bases

4V9N|1|AA|A|109, 4V9N|1|AA|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V9N_002 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.0702

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.6

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

4V9N|1|AA|C|58
4V9N|1|AA|A|59
4V9N|1|AA|A|60
4V9N|1|AA|G|61
*
4V9N|1|AA|C|106
4V9N|1|AA|G|107
4V9N|1|AA|G|108
4V9N|1|AA|A|109
4V9N|1|AA|C|110
4V9N|1|AA|G|111
4V9N|1|AA|G|112
4V9N|1|AA|G|113
*
4V9N|1|AA|C|314
4V9N|1|AA|A|315
4V9N|1|AA|G|316
*
4V9N|1|AA|C|337
4V9N|1|AA|A|338
4V9N|1|AA|C|339
*
4V9N|1|AA|G|350
4V9N|1|AA|G|351
4V9N|1|AA|C|352
4V9N|1|AA|A|353
4V9N|1|AA|G|354

Current chains

Chain AA

16S rRNA (1504-MER)

Nearby chains

Chain AP

30S ribosomal protein S16

Chain AT

30S ribosomal protein S20

Chain BO

50S ribosomal protein L14