J5_4V9Q_007

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UUUA*UUUG*CG*CG*CGGAUAAAA

Length

21 nucleotides

Bulged bases

4V9Q|1|AA|U|2076, 4V9Q|1|AA|G|2428, 4V9Q|1|AA|G|2429, 4V9Q|1|AA|A|2430, 4V9Q|1|AA|U|2431

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V9Q_007 not in the Motif Atlas

Homologous match to J5_9DFE_007

Geometric discrepancy: 0.0852

The information below is about J5_9DFE_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_39529.1

Basepair signature

cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

4V9Q|1|AA|U|2074
4V9Q|1|AA|U|2075
4V9Q|1|AA|U|2076
4V9Q|1|AA|A|2077
*
4V9Q|1|AA|U|2243
4V9Q|1|AA|U|2244
4V9Q|1|AA|U|2245
4V9Q|1|AA|G|2246
*
4V9Q|1|AA|C|2258
4V9Q|1|AA|G|2259
*
4V9Q|1|AA|C|2281
4V9Q|1|AA|G|2282
*
4V9Q|1|AA|C|2427
4V9Q|1|AA|G|2428
4V9Q|1|AA|G|2429
4V9Q|1|AA|A|2430
4V9Q|1|AA|U|2431
4V9Q|1|AA|A|2432
4V9Q|1|AA|A|2433
4V9Q|1|AA|A|2434
4V9Q|1|AA|A|2435

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AD

50S ribosomal protein L2

Chain AL

50S ribosomal protein L15

Chain AW

50S ribosomal protein L27

Chain AX

50S ribosomal protein L28

Chain BW

Transfer RNA; tRNA