J5_4V9Q_010

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

4V9Q|1|CA|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V9Q_010 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0703

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

4V9Q|1|CA|C|47
4V9Q|1|CA|G|48
4V9Q|1|CA|A|49
4V9Q|1|CA|U|50
4V9Q|1|CA|G|51
4V9Q|1|CA|A|52
4V9Q|1|CA|A|53
4V9Q|1|CA|G|54
*
4V9Q|1|CA|C|116
4V9Q|1|CA|G|117
4V9Q|1|CA|A|118
4V9Q|1|CA|A|119
4V9Q|1|CA|U|120
4V9Q|1|CA|G|121
*
4V9Q|1|CA|C|130
4V9Q|1|CA|G|131
*
4V9Q|1|CA|C|148
4V9Q|1|CA|A|149
4V9Q|1|CA|C|150
*
4V9Q|1|CA|G|176
4V9Q|1|CA|G|177
4V9Q|1|CA|G|178

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain C4

50S ribosomal protein L34

Chain CT

50S ribosomal protein L23