J5_4V9Q_017

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V9Q_017 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.0899

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4V9Q|1|DA|C|36
4V9Q|1|DA|U|37
4V9Q|1|DA|G|38
4V9Q|1|DA|G|39
*
4V9Q|1|DA|C|403
4V9Q|1|DA|U|404
4V9Q|1|DA|U|405
4V9Q|1|DA|G|406
*
4V9Q|1|DA|C|436
4V9Q|1|DA|U|437
4V9Q|1|DA|G|438
4V9Q|1|DA|A|439
4V9Q|1|DA|A|440
4V9Q|1|DA|C|442
*
4V9Q|1|DA|G|492
4V9Q|1|DA|G|493
4V9Q|1|DA|U|494
4V9Q|1|DA|A|495
4V9Q|1|DA|A|496
4V9Q|1|DA|U|497
4V9Q|1|DA|A|498
4V9Q|1|DA|G|500
*
4V9Q|1|DA|C|545
4V9Q|1|DA|G|546
4V9Q|1|DA|A|547
4V9Q|1|DA|G|548

Current chains

Chain DA

16S ribosomal RNA

Nearby chains

Chain DD

30S ribosomal protein S4

Chain DL

30S ribosomal protein S12