J5_4V9R_006
3D structure
- PDB id
- 4V9R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CGACUC*GGAC*GUUC*GC*GCGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 4V9R|1|BA|U|1301
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4V9R_006 not in the Motif Atlas
- Homologous match to J5_9DFE_004
- Geometric discrepancy: 0.0429
- The information below is about J5_9DFE_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.6
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
4V9R|1|BA|C|607
4V9R|1|BA|G|608
4V9R|1|BA|A|609
4V9R|1|BA|C|610
4V9R|1|BA|U|611
4V9R|1|BA|C|612
*
4V9R|1|BA|G|715
4V9R|1|BA|G|716
4V9R|1|BA|A|717
4V9R|1|BA|C|718
*
4V9R|1|BA|G|856
4V9R|1|BA|U|857
4V9R|1|BA|U|858
4V9R|1|BA|C|859
*
4V9R|1|BA|G|1240
4V9R|1|BA|C|1241
*
4V9R|1|BA|G|1296
4V9R|1|BA|C|1297
4V9R|1|BA|G|1298
4V9R|1|BA|A|1299
4V9R|1|BA|A|1300
4V9R|1|BA|U|1301
4V9R|1|BA|G|1302
Current chains
- Chain BA
- 23S Ribosomal RNA
Nearby chains
- Chain B8
- 50S Ribosomal Protein L35
- Chain BF
- 50S Ribosomal Protein L4
- Chain BP
- 50S Ribosomal Protein L15
- Chain BU
- 50S Ribosomal Protein L20
- Chain BV
- 50S Ribosomal Protein L21
Coloring options: