J5_4V9R_012

3D structure

PDB id

4V9R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

4V9R|1|DA|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V9R_012 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0576

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.1

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

4V9R|1|DA|C|47
4V9R|1|DA|G|48
4V9R|1|DA|A|49
4V9R|1|DA|U|50
4V9R|1|DA|G|51
4V9R|1|DA|A|52
4V9R|1|DA|A|53
4V9R|1|DA|G|54
*
4V9R|1|DA|C|116
4V9R|1|DA|G|117
4V9R|1|DA|A|118
4V9R|1|DA|A|119
4V9R|1|DA|U|120
4V9R|1|DA|G|121
*
4V9R|1|DA|C|130
4V9R|1|DA|G|131
*
4V9R|1|DA|C|148
4V9R|1|DA|A|149
4V9R|1|DA|C|150
*
4V9R|1|DA|G|176
4V9R|1|DA|G|177
4V9R|1|DA|G|178

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain D7

50S Ribosomal Protein L34

Chain DX

50S Ribosomal Protein L23