J5_4W21_001

3D structure

PDB id

4W21 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the large ribosomal subunit RNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCAGCG*CGUACG*CGGAGUCG*CAAAGCG*UAAG

Length

31 nucleotides

Bulged bases

4W21|1|5|C|159, 4W21|1|5|C|309

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4W21|1|5|C|111
4W21|1|5|C|112
4W21|1|5|A|113
4W21|1|5|G|114
4W21|1|5|C|115
4W21|1|5|G|116
*
4W21|1|5|C|155
4W21|1|5|G|156
4W21|1|5|U|157
4W21|1|5|A|158
4W21|1|5|C|159
4W21|1|5|G|160
*
4W21|1|5|C|276
4W21|1|5|G|277
4W21|1|5|G|278
4W21|1|5|A|279
4W21|1|5|G|280
4W21|1|5|U|281
4W21|1|5|C|282
4W21|1|5|G|283
*
4W21|1|5|C|304
4W21|1|5|A|305
4W21|1|5|A|306
4W21|1|5|A|307
4W21|1|5|G|308
4W21|1|5|C|309
4W21|1|5|G|310
*
4W21|1|5|U|327
4W21|1|5|A|328
4W21|1|5|A|329
4W21|1|5|G|330

Current chains

Chain 5

28S ribosomal RNA

Nearby chains