J5_4W21_002
3D structure
- PDB id
- 4W21 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the large ribosomal subunit RNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GGAGUCU*AGGAC*GUUC*GCC*GCAGAUC
- Length
- 26 nucleotides
- Bulged bases
- 4W21|1|5|C|2289, 4W21|1|5|U|2350
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4W21|1|5|G|1335
4W21|1|5|G|1336
4W21|1|5|A|1337
4W21|1|5|G|1338
4W21|1|5|U|1339
4W21|1|5|C|1340
4W21|1|5|U|1341
*
4W21|1|5|A|1515
4W21|1|5|G|1516
4W21|1|5|G|1517
4W21|1|5|A|1518
4W21|1|5|C|1519
*
4W21|1|5|G|1658
4W21|1|5|U|1659
4W21|1|5|U|1660
4W21|1|5|C|1661
*
4W21|1|5|G|2288
4W21|1|5|C|2289
4W21|1|5|C|2290
*
4W21|1|5|G|2345
4W21|1|5|C|2346
4W21|1|5|A|2347
4W21|1|5|G|2348
4W21|1|5|A|2349
4W21|1|5|U|2350
4W21|1|5|C|2351
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: