J5_4W21_003

3D structure

PDB id

4W21 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the large ribosomal subunit RNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGAG*CGCAAUGAAGGUGAAG*CGAG*CGG*CACGAG

Length

33 nucleotides

Bulged bases

4W21|1|5|A|1387, 4W21|1|5|A|1397, 4W21|1|5|C|1501

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4W21|1|5|C|1352
4W21|1|5|G|1353
4W21|1|5|A|1354
4W21|1|5|G|1355
*
4W21|1|5|C|1384
4W21|1|5|G|1385
4W21|1|5|C|1386
4W21|1|5|A|1387
4W21|1|5|A|1388
4W21|1|5|U|1389
4W21|1|5|G|1390
4W21|1|5|A|1391
4W21|1|5|A|1392
4W21|1|5|G|1393
4W21|1|5|G|1394
4W21|1|5|U|1395
4W21|1|5|G|1396
4W21|1|5|A|1397
4W21|1|5|A|1398
4W21|1|5|G|1399
*
4W21|1|5|C|1418
4W21|1|5|G|1419
4W21|1|5|A|1420
4W21|1|5|G|1421
*
4W21|1|5|C|1464
4W21|1|5|G|1465
4W21|1|5|G|1466
*
4W21|1|5|C|1499
4W21|1|5|A|1500
4W21|1|5|C|1501
4W21|1|5|G|1502
4W21|1|5|A|1503
4W21|1|5|G|1504

Current chains

Chain 5

28S ribosomal RNA

Nearby chains