J5_4W21_004

3D structure

PDB id

4W21 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the large ribosomal subunit RNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUAGUAGCAAAUAU*AGGCCGAAGUG*CAA*UCUGGCAUGUU*AGCGAAAC

Length

47 nucleotides

Bulged bases

4W21|1|5|A|2366, 4W21|1|5|U|2369, 4W21|1|5|A|2396, 4W21|1|5|U|2826, 4W21|1|5|U|2828

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4W21|1|5|G|2358
4W21|1|5|U|2359
4W21|1|5|A|2360
4W21|1|5|G|2361
4W21|1|5|U|2362
4W21|1|5|A|2363
4W21|1|5|G|2364
4W21|1|5|C|2365
4W21|1|5|A|2366
4W21|1|5|A|2367
4W21|1|5|A|2368
4W21|1|5|U|2369
4W21|1|5|A|2370
4W21|1|5|U|2371
*
4W21|1|5|A|2389
4W21|1|5|G|2390
4W21|1|5|G|2391
4W21|1|5|C|2392
4W21|1|5|C|2393
4W21|1|5|G|2394
4W21|1|5|A|2395
4W21|1|5|A|2396
4W21|1|5|G|2397
4W21|1|5|U|2398
4W21|1|5|G|2399
*
4W21|1|5|C|2805
4W21|1|5|A|2806
4W21|1|5|A|2807
*
4W21|1|5|U|2819
4W21|1|5|C|2820
4W21|1|5|U|2821
4W21|1|5|G|2822
4W21|1|5|G|2823
4W21|1|5|C|2824
4W21|1|5|A|2825
4W21|1|5|U|2826
4W21|1|5|G|2827
4W21|1|5|U|2828
4W21|1|5|U|2829
*
4W21|1|5|A|3856
4W21|1|5|G|3857
4W21|1|5|C|3858
4W21|1|5|G|3859
4W21|1|5|A|3860
4W21|1|5|A|3861
4W21|1|5|A|3862
4W21|1|5|C|3863

Current chains

Chain 5

28S ribosomal RNA

Nearby chains