J5_4W21_006

3D structure

PDB id

4W21 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the large ribosomal subunit RNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCAAGCCGG*UG*UG*CGGACCAGG*CAC

Length

25 nucleotides

Bulged bases

4W21|1|5|G|3620, 4W21|1|5|G|3625

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4W21|1|5|G|2855
4W21|1|5|C|2856
4W21|1|5|A|2857
4W21|1|5|A|2858
4W21|1|5|G|2859
4W21|1|5|C|2860
4W21|1|5|C|2861
4W21|1|5|G|2862
4W21|1|5|G|2863
*
4W21|1|5|U|2887
4W21|1|5|G|2888
*
4W21|1|5|U|3613
4W21|1|5|G|3614
*
4W21|1|5|C|3618
4W21|1|5|G|3619
4W21|1|5|G|3620
4W21|1|5|A|3621
4W21|1|5|C|3622
4W21|1|5|C|3623
4W21|1|5|A|3624
4W21|1|5|G|3625
4W21|1|5|G|3626
*
4W21|1|5|C|3835
4W21|1|5|A|3836
4W21|1|5|C|3837

Current chains

Chain 5

28S ribosomal RNA

Nearby chains