J5_4W21_007

3D structure

PDB id

4W21 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the large ribosomal subunit RNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AGAAGACCC*GGGAUAACUGGCUUG*UGAUCCUUCGAUGUC*GGUUUAG*UAGUUU

Length

52 nucleotides

Bulged bases

4W21|1|5|A|3908, 4W21|1|5|A|4394, 4W21|1|5|G|4451, 4W21|1|5|U|4452, 4W21|1|5|U|4531, 4W21|1|5|U|4555, 4W21|1|5|U|4556

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4W21|1|5|A|3903
4W21|1|5|G|3904
4W21|1|5|A|3905
4W21|1|5|A|3906
4W21|1|5|G|3907
4W21|1|5|A|3908
4W21|1|5|C|3909
4W21|1|5|C|3910
4W21|1|5|C|3911
*
4W21|1|5|G|4391
4W21|1|5|G|4392
4W21|1|5|G|4393
4W21|1|5|A|4394
4W21|1|5|U|4395
4W21|1|5|A|4396
4W21|1|5|A|4397
4W21|1|5|C|4398
4W21|1|5|U|4399
4W21|1|5|G|4400
4W21|1|5|G|4401
4W21|1|5|C|4402
4W21|1|5|U|4403
4W21|1|5|U|4404
4W21|1|5|G|4405
*
4W21|1|5|U|4439
4W21|1|5|G|4440
4W21|1|5|A|4441
4W21|1|5|U|4442
4W21|1|5|C|4443
4W21|1|5|C|4444
4W21|1|5|U|4445
4W21|1|5|U|4446
4W21|1|5|C|4447
4W21|1|5|G|4448
4W21|1|5|A|4449
4W21|1|5|U|4450
4W21|1|5|G|4451
4W21|1|5|U|4452
4W21|1|5|C|4453
*
4W21|1|5|G|4528
4W21|1|5|G|4529
4W21|1|5|U|4530
4W21|1|5|U|4531
4W21|1|5|U|4532
4W21|1|5|A|4533
4W21|1|5|G|4534
*
4W21|1|5|U|4552
4W21|1|5|A|4553
4W21|1|5|G|4554
4W21|1|5|U|4555
4W21|1|5|U|4556
4W21|1|5|U|4557

Current chains

Chain 5

28S ribosomal RNA

Nearby chains