J5_4W21_008

3D structure

PDB id

4W21 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the large ribosomal subunit RNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UUGA*UUUGA*UACA*UG*CAGAAAA

Length

22 nucleotides

Bulged bases

4W21|1|5|G|3922, 4W21|1|5|A|4203, 4W21|1|5|A|4376, 4W21|1|5|G|4377, 4W21|1|5|A|4378, 4W21|1|5|A|4379

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4W21|1|5|U|3920
4W21|1|5|U|3921
4W21|1|5|G|3922
4W21|1|5|A|3923
*
4W21|1|5|U|4188
4W21|1|5|U|4189
4W21|1|5|U|4190
4W21|1|5|G|4191
4W21|1|5|A|4192
*
4W21|1|5|U|4202
4W21|1|5|A|4203
4W21|1|5|C|4204
4W21|1|5|A|4205
*
4W21|1|5|U|4227
4W21|1|5|G|4228
*
4W21|1|5|C|4375
4W21|1|5|A|4376
4W21|1|5|G|4377
4W21|1|5|A|4378
4W21|1|5|A|4379
4W21|1|5|A|4380
4W21|1|5|A|4381

Current chains

Chain 5

28S ribosomal RNA

Nearby chains