J5_4W21_009

3D structure

PDB id

4W21 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the large ribosomal subunit RNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUCCUAAGGC*GCUUG*CC*GGGGCCUCACGAUCCUUC*GGAGGUGUC

Length

44 nucleotides

Bulged bases

4W21|1|5|C|4332, 4W21|1|5|U|4374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4W21|1|5|G|4228
4W21|1|5|U|4229
4W21|1|5|C|4230
4W21|1|5|C|4231
4W21|1|5|U|4232
4W21|1|5|A|4233
4W21|1|5|A|4234
4W21|1|5|G|4235
4W21|1|5|G|4236
4W21|1|5|C|4237
*
4W21|1|5|G|4287
4W21|1|5|C|4288
4W21|1|5|U|4289
4W21|1|5|U|4290
4W21|1|5|G|4291
*
4W21|1|5|C|4318
4W21|1|5|C|4319
*
4W21|1|5|G|4328
4W21|1|5|G|4329
4W21|1|5|G|4330
4W21|1|5|G|4331
4W21|1|5|C|4332
4W21|1|5|C|4333
4W21|1|5|U|4334
4W21|1|5|C|4335
4W21|1|5|A|4336
4W21|1|5|C|4337
4W21|1|5|G|4338
4W21|1|5|A|4339
4W21|1|5|U|4340
4W21|1|5|C|4341
4W21|1|5|C|4342
4W21|1|5|U|4343
4W21|1|5|U|4344
4W21|1|5|C|4345
*
4W21|1|5|G|4367
4W21|1|5|G|4368
4W21|1|5|A|4369
4W21|1|5|G|4370
4W21|1|5|G|4371
4W21|1|5|U|4372
4W21|1|5|G|4373
4W21|1|5|U|4374
4W21|1|5|C|4375

Current chains

Chain 5

28S ribosomal RNA

Nearby chains